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For the 2026 school year, there are 9 public schools serving 1,737 students in Holly Springs, MS (there are , serving 507 private students). 77% of all K-12 students in Holly Springs, MS are educated in public schools (compared to the MS state average of 89%).

The top-ranked public schools in Holly Springs, MS are Galena Elementary School (K-7), H. W. Byers Elementary (K-4) and Holly Springs High School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Holly Springs, MS public schools have an average math proficiency score of 31% (versus the Mississippi public school average of 53%), and reading proficiency score of 23% (versus the 42% statewide average). Schools in Holly Springs have an average ranking of 2/10, which is in the bottom 50% of Mississippi public schools.

Minority enrollment is 87% of the student body (majority Black), which is more than the Mississippi public school average of 58% (majority Black).